Thursday, May 26, 2022

May 26, 2022: Johns Hopkins COVID 19 Situation Report

COVID-19 Situation Report

Editor: Alyson Browett, MPH

Contributors: Clint Haines, MS; Noelle Huhn, MSPH; Natasha Kaushal, MSPH; Amanda Kobokovich, MPH; Christina Potter, MSPH; Matthew Shearer, MPH; Marc Trotochaud, MSPH; and, Rachel A. Vahey, MHS.

NOTICE The COVID-19 Situation Report will not publish on Tuesday, May 31, 2022. The next Report will be published on Thursday, June 2, 2022.

UPCOMING WEBINAR With summer approaching, engaging in sporting events can seem daunting for athletes and spectators alike, especially as the world continues to respond to the pandemic. This webinar will focus on COVID-19 testing strategies and best practices for large sporting events. The panelists, Dr. Brian McCloskey and Ms. Lucia Mullen, served on WHO’s COVID-19 Mass Gatherings Expert Group. They advised Olympic organizers on COVID-19 countermeasures for the Tokyo 2020 Summer and the Beijing 2022 Winter Games. They will discuss developing and implementing masking, testing, and vaccination strategies for the world’s largest international sporting celebrations. Please join us on June 1 at 10:00am ET. Registration is available here.

MONKEYPOX OUTBREAKS UPDATE Read our latest update from May 25 on the monkeypox outbreaks. A newfact sheet also is available. We will continue to analyze the situation and provide updates, as needed. If you would like to receive these updates, please sign up here.

EPI UPDATE The WHO COVID-19 Dashboard reports 524.3 million cumulative cases and 6.28 million deaths worldwide as of May 25. The global weekly incidence decreased slightly (-0.8%) over the previous week. The weekly trends are increasing in the Americas (+13.2%) and Western Pacific (+5.7%) regions, while decreasing trends were observed in the remaining 4 regions. The trend in reported global weekly mortality decreased for a seventh consecutive week, down 6% from the previous week. The number of new weekly deaths increased in the Eastern Mediterranean region (+30%) after the region reported major increases in daily incidence over the past couple weeks. The number of new weekly deaths remained stable in the Western Pacific and the Americas regions (both <1%), and decreased in the other 3 regions.

UNITED STATES

The US CDC is reporting 83.4 million cumulative cases of COVID-19 and 1,000,254 deaths. As expected, the cumulative number of COVID-19 deaths surpassed 1 million on May 24. The current average daily incidence continues to increase, up to 104,399 on May 24 from 99,215 new cases per day on May 17. The daily mortality is fairly steady at an average of 288 deaths per day*, and we have not yet observed an increase corresponding to the surge in daily incidence. New COVID-19 hospital admissions continue to trend upwards, with an increase of 14% over the past week. New cases are now being driven by the the BA.2.12.1 sublineage of Omicron (58%), which this week became the predominant variant over the BA.2 subvariant (39%).

*Changes in state-level reporting may affect the accuracy of recently reported data, particularly over weekends. In an effort to reflect the longer-term trends, the numbers reported here may not correspond to the most recent dates.

OMICRON SUBVARIANTS The US recently began averaging more than 100,000 new daily COVID-19 cases for the first time since February. As of the end of last week, 58% of new US cases are caused by the Omicron subvariant known as BA.2.12.1. There is no indication the variant causes more severe disease than previous Omicron variants, but new hospitalizations also are increasing. However, BA.2.12.1—as well as the other Omicron sublineages BA.4 and BA.5, which the European Centre for Disease Control and Prevention (ECDC) have deemed variants of concern and are currently circulating at low levels in the US—are even more transmissible than the BA.1 version of Omicron that caused high caseloads in early 2022. The 3 sublineages also likely are capable of escaping some of the immunity produced by infection with BA.1 and BA.2. The consistent resurgence of viral variants creates challenges to maintaining long-lasting defense against COVID-19, but the best defense against severe disease and death remains staying up-to-date on vaccinations.

US CDC PAXLOVID ADVISORY ​The US CDC on May 24 issued a Health Alert Network (HAN) Health Advisory to inform healthcare providers and the public about the possible recurrence of COVID-19 following Paxlovid treatment, commonly referred to as “COVID-19 rebound” or “Paxlovid rebound.” Paxlovid, an oral antiviral drug for early-stage treatment of mild-to-moderate COVID-19, was authorized for emergency use in December 2021 for persons aged 12 years and older who are at high risk for progression to severe illness. The drug has shown to reduce the risk of hospitalization and death due to COVID-19. In the advisory, the CDC emphasized that brief recurrence of COVID-19 symptoms could be part of the natural history of infection, regardless of treatment and vaccination status. However, individuals with recurrent symptoms or a new positive viral test are advised to follow current CDC recommendations for isolation by re-isolating for at least 5 days and when fever has resolved for 24 hours. 

Today, the administration of US President Joe Biden announced plans to make Paxlovid even more accessible as the nation experiences another surge in new COVID-19 cases. The nation’s first federally supported test-to-treat site opened today in Rhode Island to provide Paxlovid to individuals who test positive. Other test-to-treat sites are expected to open soon in Massachusetts and New York City, and established testing sites across the country will soon be equipped to transition to test-to-treat locations, according to the administration.

LONG COVID/PASC In the third year of the COVID-19 pandemic, researchers are beginning to learn more about post-acute sequelae of SARS-CoV-2 (PASC), commonly known as long COVID. The condition—characterized by a broad range of symptoms lasting anywhere from 4 weeks to 2 years or longer—could prove one of the biggest hurdles to pandemic recovery. Estimates of the proportion of people who have had COVID-19 and continue to experience symptoms range from 5% to 80%, although the WHO puts the range at 10% to 20%. Results from a large study published this week in the US CDC’s Morbidity and Mortality Weekly Report (MMWR) estimates that 1 in 5 COVID-19 survivors aged 18-64 and 1 in 4 survivors aged 65 or older experienced at least 1 of 26 conditions often attributable to long COVID at 30 days and up to 1 year following diagnosis. Both age groups had twice the risk of uninfected people of developing respiratory symptoms or other lung problems, including pulmonary embolism. The older cohort was at greater risk than the younger group to develop kidney failure, neurological conditions, and mental health conditions. The authors of the study, members of the CDC COVID-19 Emergency Response Team, encouraged people who survive COVID-19 to undergo routine assessment for post-COVID conditions.

Another study, published in Nature Medicine on May 23, found that 1 in 8 adults who were hospitalized with COVID-19 developed myocarditis 28 to 60 days post-discharge, and many COVID-19 survivors experienced reduced exercise capacity, lower quality of life, and persistent abnormalities in heart, lung, and kidney exams. The researchers said study participants’ post-COVID conditions were more closely correlated with the severity of their COVID-19 infection, not their underlying health condition prior to infection, and they cautioned these persistent health problems could place a substantial demand on healthcare services in the future, as more people survive COVID-19.

US NIH researchers conducting an ongoing study comparing 189 COVID-19 patients to 120 similar patients who did not have COVID-19 found no indications of underlying cause for the COVID-19 group to have more persistent symptoms. The study, published in the Annals of Internal Medicine, showed no evidence of persistent viral infection, autoimmunity, or abnormal immune activation among long COVID patients. They did note that women and those with a history of anxiety disorder were at increased risk of PASC/long COVID, but they also stressed the findings do not mean the condition is psychological. A third study, published in the Annals of Clinical and Translational Neurology, found that neurological symptoms—including brain fog, numbness/tingling, headache, dizziness, blurred vision, tinnitus, and fatigue—among many of the 52 non-hospitalized COVID-19 patients in the study persisted for nearly 15 months after initial diagnosis. Some symptoms, including variations in heart rate and blood pressure and gastrointestinal problems, increased over time, but loss of taste and smell generally improved. Among the participants, 77% were vaccinated against COVID-19, but vaccination did not have a positive or negative impact on cognitive function or fatigue.

Notably, a large study conducted by the US Department of Veterans Affairs (VA) and published in Nature Medicine showed that SARS-CoV-2 vaccination appears to reduce the risk of lung and blood clot disorders among COVID-19 survivors, but vaccination does little to protect against long-term symptoms among those who had breakthrough infections, about 1% of the study participants. Overall, vaccinated people who had breakthrough infections had lower risks of death (HR=0.66, 95% CI: 0.58, 0.74) and long-term symptoms (HR=0.85, 95% CI: 0.82, 0.89). The data confirm that vaccination strongly protects against serious disease and death but suggest that vaccination prior to infection confers only partial protection against PASC and should not be relied upon as a sole mitigation strategy, the researchers noted. The VA study was conducted prior to the emergence of the Omicron variant, and a preprint study conducted in Japan and posted this week to medRxiv suggests the prevalence of long-term symptoms following infection with Omicron might be less than with other variants.

PFIZER PRICING DEAL During the World Economic Forum annual meeting in Davos, Switzerland, this week, Pfizer pledged to provide 23 of its patented medicines and vaccines to treat infectious diseases, certain cancers, and rare and inflammatory diseases—including those for COVID-19—at not-for-profit pricing to 45 lower-income countries. The company’s “An Accord for a Healthier World” also includes future products and is expected to benefit 1.2 billion people. Rwanda, Ghana, Malawi, Senegal, and Uganda are the first nations included in the deal. Haiti, Bangladesh, and Tajikistan also are on the list. Pfizer CEO Albert Bourla said the plan also includes strategies aimed at improving access to diagnostics, technical assistance, and training of healthcare workers. Some advocates welcomed the announcement, while others criticized the effort as being too little, too late.

Also at the meeting, the Serum Institute of India (SII), the world's largest vaccine manufacturer, announced it is looking into establishing a manufacturing plant in Africa. SII CEO Adar Poonawalla said he is working to distribute a draft global treaty to help ensure more equitable access to vaccines and other healthcare during this pandemic and future outbreak emergencies.

PANDEMIC PREPAREDNESS The World Health Assembly (WHA) is meeting this week in Geneva, the first time the WHO decision-making body has met in person since the beginning of the COVID-19 pandemic. On May 24, the WHA approved a report from the Working Group on Preparedness and Response to Health Emergencies that includes a roadmap for the creation of a new instrument for pandemic preparedness and response. The report proposes actions to address critical gaps in prevention, preparedness and response to health emergencies, including pandemics; categorizes 131 recommendations by priority, feasibility, and implementation pathway; and highlights which steps are currently underway. High priority recommendations include recommitment to the binding obligations of the International Health Regulations (IHR). Other priorities include building capacity for local manufacturing with the support of technology transfer and research hubs, international coordination to quickly identify and sound alerts to emerging zoonotic diseases, and expanding regional capacities for genomic sequencing. In June, the Intergovernmental Negotiating Body will meet to discuss the roadmap and recommendations.

​​The WHA has faced online conspiracy theories regarding the discussion of a pandemic treaty, with misinformation accusing the WHO of attempting to impede national sovereignty. While Member States agreed that a new agreement is needed, negotiations for such an agreement will take years to produce a final draft. The false ideas of the treaty being used to take power from national governments have been popularized by various internet figures and boosted by mainstream politicians. Despite these statements, the WHA remains focused on navigating the end of the COVID-19 pandemic and preparing for the next health emergency.

CHILDHOOD LEARNING LOSS The COVID-19 pandemic caused the greatest disruption to education in history, causing students worldwide to miss an average of 4.5 months of schooling or up to 22 weeks of learning. Many students fell behind in standards of learning, and some developed behavioral or psychological problems. Those students in the poorest countries have been hit hardest, as have disadvantaged and vulnerable children in wealthier nations, exacerbating existing inequities. As school systems and teachers try to get students back on track, some nations are looking to decades of research to inform their COVID-19 responses, with a focus on tutoring, voluntary summer school, and other evidence-based education recovery strategies. Proponents of evidence-informed education encourage more quality research be conducted and urge educators and policymakers to seriously consider the results and implement reforms specific to their settings in order to strengthen education systems. Additionally, they encourage the coupling of education research and continuing education for teachers, making teachers researchers and vice versa. But advocates warn that national, state, and local leaders must act quickly to fill the educational gaps created by school closures during the pandemic.

CHINA Full economic recovery from the COVID-19 pandemic is expected to be a gradual process for China. But the country is taking the matter seriously, with China’s cabinet holding an emergency meeting of more than 100,000 provincial, city, and council leaders to discuss new measures to stabilize the economy. Shanghai, the nation’s financial hub, looks to be making steps toward normalization after dealing with months of severe pandemic prevention restrictions. China continues to pursue a “zero COVID” policy, but increasingly strict control measures are causing tension in some metropolitan areas. The government has used extreme measures, including locking residents in their buildings, relocating thousands of residents to other cities for quarantine, and invading private residences to spray disinfectants. Now, some cities and provinces are instituting regular mass SARS-CoV-2 testing to try to keep the virus at bay. The 99 million residents of Henan Province will be required to take PCR tests every other day as of June, and people in Beijing must test in order to ride the subway or enter any public space. The intense restrictions on personal life and freedom have been a major cause of discontent among younger populations, and many are now seeking to leave China or are protesting the restrictions by refusing to have children. The discontented populations claim they do not want to have children because they feel they could never protect them from an authoritarian regime that has little regard for personal liberties.

RESEARCH ROUNDUP The research roundup provides quick synopses of COVID-19-related research.

From JAMA Network Open, a small cohort study of 50 healthy young and middle-aged individuals examining factors associated with blood levels of anti-SARS-CoV-2 antibodies at 6 months following vaccination. The study found that anti-SARS-CoV-2-specific antibody levels were inversely correlated with bodyweight, body mass index, body fat amount, and body weight to height ratio, sustained up to 6 months post-vaccination. The researchers concluded that young and middle-aged healthy persons with low body weight could wait at least 6 months after finishing a primary 2-dose vaccination series to receive a booster dose.

From The Lancet Respiratory Medicine, a randomized, open-label, controlled clinical trial evaluating the safety and immune response of a heterologous high- or low-dose booster of an adenovirus vector-based SARS-CoV-2 vaccine (CanSino Biologic’s Convidecia) administered via oral aerosolization or a homologous intramuscular vaccination with CoronaVac among Chinese adults who previously received 2 doses of CoronaVac. The researchers found that participants in both the high- and low-dose heterologous booster groups had fewer side effects and higher neutralizing antibody responses compared with the CoronaVac group. The interim analysis serves as a proof of concept for an inhaled aerosolized vaccination, and an additional trial to evaluate the vaccine as a booster is planned.

From eClinicalMedicine, a systematic review of 156 studies published through March 13, 2022, analyzing social media use and attitudes toward and behaviors related to SARS-CoV-2 vaccination. The researchers—from Italy, Serbia, and the US—conclude that public health interventions could effectively use social media platforms to promote vaccine uptake.

From JAMA, a research letter describing a prospective study examining the outcomes of children with multisystem inflammatory syndrome (MIS-C) as a complication of SARS-CoV-2 infection who were evaluated at 12 Israeli hospitals over 16-week periods in each of the Alpha, Delta, and Omicron variant waves. The researchers found that cardiac outcomes were more favorable, fewer children were admitted to intensive care units (ICUs), and median hospital length of stay was shorter during the Omicron wave compared with the Alpha and Delta waves. None of the patients needed mechanical ventilation during the Omicron wave, compared with 8.5% during Alpha and 8.9% during Delta. The results suggest that MIS-C was less severe during the Omicron wave compared with other COVID-19 pandemic waves, a finding that is consistent with other studies.

From BMJ, a retrospective, test-negative, case-control study examining the relative vaccine effectiveness (VE) of a fourth dose of the Pfizer-BioNTech mRNA SARS-CoV-2 vaccine compared with 3 doses over a 10-week span. The study included nearly 97,500 individuals aged 60 and older in Israel. The researchers concluded that a fourth vaccine dose appears to provide additional protection from COVID-19-related severe disease and death but the relative VE of the fourth dose against infection wanes sooner than that of a third dose, peaking at 65% 3 weeks following the booster and falling to 22% at the end of week 10. However, relative VE against severe disease remained high (72%) through the 10-week follow-up, although severe disease was rare among participants who had received 3 or 4 doses.

From The Lancet Oncology, a population-based, test-negative, case-control study examining overall SARS-CoV-2 vaccine effectiveness (VE) against breakthrough infections at 3-6 months after the second dose among people with cancer and a control population in the UK. The researchers found that although SARS-CoV-2 vaccination is effective in most individuals with active or recent cancer, vaccination provides lower levels of protection against infection, hospitalization, and death than in the general population. Additionally, VE wanes more quickly among cancer patients than the general population and is lowest and wanes most quickly in those with lymphoma and leukemia. The researchers encouraged those with active or recent cancer, and especially those with blood cancers, to stay up-to-date on their vaccine doses, in some cases meaning 5 doses.

From Scientific Reports, a longitudinal study evaluating COVID-19 containment strategies across 50 different countries and territories, differentiating between pre-vaccine and vaccinating phases. The ranking shows that countries in Oceania and Asia outperformed countries in other regions on pandemic containment during the pre-vaccine phase, with success related to nonpharmaceutical interventions (NPIs), early action, and policy adjustment when necessary. In the vaccinating phase, the researchers found that maintaining NPIs was the best way to protect populations, providing insight into the effectiveness of various infectious disease containment policies in different regions.

Tuesday, May 24, 2022

May 24, 2022: Johns Hopkins COVID 19 Situation Report

COVID-19 Situation Report

Editor: Alyson Browett, MPH

Contributors: Clint Haines, MS; Natasha Kaushal, MSPH; Amanda Kobokovich, MPH; Christina Potter, MSPH; Matthew Shearer, MPH; Marc Trotochaud, MSPH; and, Rachel A. Vahey, MHS.

UPCOMING WEBINAR ON PANDEMIC PREPAREDNESS FUNDING The COVID-19 pandemic has caused trillions of dollars in US economic losses and made clear that the country must bolster its public health emergency preparedness posture. In fact, the President’s FY23 budget request includes US$88.2 billion in mandatory funding for emerging biological catastrophes. Hosted by the Johns Hopkins Center for Health Security, this webinar will explore the outlook for this budget request and the options for future pandemic preparedness and health security funding. Please join us on Wednesday, May 25 at 12:00pm ET. Registration is available here.

MONKEYPOX OUTBREAKS UPDATE Read our latest update from May 23 on the monkeypox outbreaks. A newfact sheet also is available. We will continue to analyze the situation and provide updates, as needed. If you would like to receive these updates, please sign up here.

SARS-COV-2 VACCINE FOR YOUNG CHILDREN Three doses of the Pfizer-BioNTech SARS-CoV-2 mRNA vaccine were 80.3% effective at preventing infection among children 6 months to under 5 years of age when the Omicron variant was predominant, according to preliminary data. The companies cautioned that the data are based on only 10 cases diagnosed among the 1,678 study participants by the end of April, a number lower than the study’s 21-case threshold for analysis. The dose for the youngest children is at the 3 mcg level, one-tenth the adult dose, chosen for its tolerability and safety data. The companies plan to complete their submission for emergency use authorization (EUA) of the vaccine for children under age 5 this week.

Hours after the companies released the preliminary data, the US FDA announced its Vaccines and Related Biological Products Advisory Committee (VRBPAC) will meet on June 14 and June 15 to review EUA requests from both Moderna and Pfizer-BioNTech. On June 14, the committee will discuss Moderna’s request for EUA of its SARS-CoV-2 mRNA vaccine for older children and adolescents aged 6 to 17 years, and on June 15, the committee will review the companies’ data on the youngest children. Moderna is requesting EUA for its vaccine for children aged 6 months to 5 years and Pfizer-BioNTech for its vaccine for children aged 6 months to 4 years. The Pfizer-BioNTech vaccine is currently authorized for use among individuals aged 5 years and older and Moderna’s is available for adults aged 18 and older.

Children under 5 are the last group for which the FDA has not yet authorized a SARS-CoV-2 vaccine, and the agency is under increasing pressure to do so. Some parents are eager to vaccinate their children, although many do not plan to vaccinate their children unless required to do so, according to polls. As of May 18, about 35% of US children ages 5 to 11 years had received at least 1 dose of vaccine and 28% had completed the 2-dose series. If the VRBPAC recommends either or both vaccines for young children, the FDA could quickly authorize the vaccines, making it possible toddlers and kindergartners could be eligible to begin receiving their shots by the summer.

US CDC BOOSTER RECOMMENDATIONS Last week, the US CDC Advisory Committee on Immunization Practices (ACIP) expanded SARS-CoV-2 vaccine booster eligibility to include everyone aged 5 years and older. The CDC recommends that children ages 5 to 11 should receive a Pfizer-BioNTech booster, or third, shot 5 months after completing the 2-dose primary series with the same vaccine, the only one currently authorized for use among that age group. In its announcement, the CDC noted that more than 4.8 million children in this age group have been diagnosed with COVID-19, 15,000 have been hospitalized, and at least 180 have died of the disease. The agency said a third dose would help enhance immunity among this age group to help protect against severe disease. Notably, many ACIP members acknowledged that data suggest mRNA SARS-CoV-2 vaccines are really 3-dose primary series vaccines versus 2-dose primary series plus a booster dose.

However, some parents have hesitated to get their children vaccinated, arguing that children have a lower risk of severe disease, despite record numbers of children being hospitalized during the height of the Omicron surge. Additionally, nearly 4,000 children have been diagnosed with multisystem inflammatory syndrome (MIS-C), a rare but potentially severe condition, since the start of the pandemic. Altogether, less than one-third of children in this age group have both doses of the vaccine, leaving them vulnerable to serious illness, according to CDC Director Dr. Rochelle Walensky. Dr. Walensky also announced the CDC strengthened its recommendation that people aged 50 and older and immunocompromised people aged 12 and older “should,” instead of “may,” get a second booster shot (fourth dose) to remain current on their vaccinations and help protect themselves from severe disease as the US experiences a sixth wave of COVID-19.

US MASK RECOMMENDATIONS/MANDATES As of May 19, at least 45% of the US population lived in areas experiencing medium-to-high COVID-19 community levels, meaning people should be wearing masks or considering masking based on their personal risk. COVID-19 community levels are calculated using new COVID-19 hospital admissions and percent of inpatient beds occupied by patients with COVID-19, both lagging indicators of COVID-19 transmission. But the agency’s data on community transmission shows more than 75% of the country is experiencing high or substantial numbers of new cases, suggesting much of the nation should be wearing masks in indoor public spaces and prompting some experts to recommend localities, businesses, and other entities reinstate mask mandates. The 7-day moving average of new daily cases is at 102,940 as of May 22, rising over 100,000 cases for the first time since February.

While no states have reissued mask mandates, the CDC on May 13 reissued its recommendation that people ages 2 and older wear masks while on public transportation and in transit stations, after the federal mandate was struck down by a judge on April 18. Additionally, some school districts are reinstating mask mandates as the number of cases increase among students and staff. Mask mandates have returned to schools in Philadelphia, PA, Brookline, MA, and Providence, RI, in recent days. New York City and most school districts in the Washington, DC-region are not bringing back mask mandates despite having high levels of community transmission. Despite the nationwide increase in cases, many US residents feel the country has moved beyond the pandemic being a crisis, making the reinstatement of public health measures difficult for local and national leaders. 

TRAVEL GUIDANCE Ahead of the summer travel season, the US CDC has added new advice regarding testing to their domestic travel guidance page. The agency now recommends that all individuals get tested for COVID-19 3 days or less prior to domestic travel, regardless of vaccination status. Prior to this change, CDC only recommended testing prior to domestic travel for individuals who were not up-to-date on their SARS-CoV-2 vaccinations (ie, primary series and booster[s] if eligible). CDC also now recommends testing after travel if the traveler engaged in higher risk activities, such as being in a crowded space without a well-fitting mask.

In addition to recommendations for domestic travel, CDC requires that individuals aged 2 years and older flying from international locales to the US show documentation of a negative COVID-19 test within 1 day of departure or proof of recovery from COVID-19 in the last 90 days. However, there is massive public pressure, particularly among travel industry businesses, for CDC to remove the international requirement due to the agency’s inability to fully articulate the rationale behind the rule. Attendees of a recent side event at the International Migration Review Forum (IMRF)—including representatives of the International Organization for Migration (IOM), Migration Policy Institute, governments, and non-governmental partners—called for the establishment of common appropriate standards for international travel to reduce confusion and impediment of cross-border mobility while supporting equitable pandemic recovery among nations.

PAXLOVID Following multiple anecdotal reports of symptoms and positive SARS-CoV-2 test results returning among some people who take a 5-day course of the COVID-19 treatment Paxlovid, the US NIH announced last week it in talks with manufacturer Pfizer to study a longer course of the antiviral. More than 660,000 courses of Paxlovid have been administered in the US, and it is unclear how often patients who take the drug experience so-called “Paxlovid rebound.” Experts from the Infectious Diseases Society of America (IDSA) briefed reporters on May 20 about the rebound effect and potential drug interactions, with information on the latter also contained in the organization’s recently updated guidance. While access to Paxlovid has increased in the US over the past several months, some physicians remain reluctant to prescribe the pills. Additionally, access to the treatment in low- and middle-income countries (LMICs) remains scarce due to limited production and affordable pricing. Experts hope that Pfizer’s licensing agreement with the Medicines Patent Pool (MPP) and supply agreement with UNICEF will improve access in LMICs later this year and into next.

ASTRAZENECA-OXFORD VACCINE The European Medicines Agency (EMA) has authorized the AstraZeneca-Oxford SARS-CoV-2 vaccine to be used as a booster (third) dose among adults who have completed the primary 2-dose course or the primary series of an approved mRNA vaccine, according to a company statement. The authorization is based on review by the EMA’s Committee for Medicinal Products for Human Use (CHMP). The AstraZeneca-Oxford vaccine, branded as Vaxzevria and Covishield, has received conditional marketing or emergency use authorization (EUA) in more than 125 countries, as well as emergency use listing (EUL) from the WHO, allowing it to be distributed through the COVAX initiative. The vaccine was AstraZeneca’s second bestseller last year, but sales are expected to fall in 2022 due to setbacks in production, rare but potentially serious adverse events, limited shelf life, global oversupply, and preferences for the mRNA vaccines made by Pfizer-BioNTech and Moderna. AstraZeneca never filed for EUA in the US, and the White House quietly canceled its contract with the company in December. The cancellation, though it saved the government some money, could hurt its global vaccine donation program, which was expected to give tens of millions of those doses to low-income countries.

WHO EUL FOR 11TH SARS-COV-2 VACCINE The WHO last week issued an emergency use listing (EUL) for CONVIDECIA, a SARS-CoV-2 vaccine made by China’s CanSino Biologics. In clinical trials, CONVIDECIA had 58% efficacy against symptomatic infection and 92% efficacy against severe COVID-19, and the single-dose vaccine can be used in adults aged 18 years and older, according to the WHO’s Strategic Advisory Group of Experts on Immunization (SAGE). The vaccine is the 11th SARS-CoV-2 vaccine to receive WHO EUL.

Thursday, May 19, 2022

May 19, 2022: Johns Hopkins COVID 19 Situation Report

Thu, May 19 at 11:27 AM

COVID-19 Situation Report

Editor: Alyson Browett, MPH

Contributors: Clint Haines, MS; Natasha Kaushal, MSPH; Amanda Kobokovich, MPH; Christina Potter, MSPH; Matthew Shearer, MPH; Marc Trotochaud, MSPH; and, Rachel A. Vahey, MHS.

UPCOMING WEBINAR The COVID-19 pandemic has caused trillions of dollars in US economic losses and made clear that the country must bolster its public health emergency preparedness posture. In fact, the President’s FY23 budget request includes US$88.2 billion in mandatory funding for emerging biological catastrophes. Hosted by the Johns Hopkins Center for Health Security, this webinar will explore the outlook for this budget request and the options for future pandemic preparedness and health security funding. Please join us on Wednesday, May 25 at 12:00pm ET. Registration is available here.

MONKEYPOX OUTBREAKS UPDATE In case you missed it, yesterday we shared an update on the monkeypox outbreaks. Public health experts worldwide are on alert over several outbreaks of confirmed and suspected cases of monkeypox. The seemingly unconnected clusters raise concerns there is more than one chain of transmission. Read our update and new fact sheet. We will be analyzing and providing updates, as needed, on the monkeypox outbreaks that have been identified. If you would like to receive these updates, please sign up here.

EPI UPDATE The WHO COVID-19 Dashboard reports 520 million cumulative cases and 6.27 million deaths worldwide as of May 18. After 7 consecutive weeks of decline, the global weekly incidence increased 4% over the previous week. The weekly trends are increasing in Africa (+7.7%), the Americas (+27.2%), and the Eastern Mediterranean (+65.3%) and Western Pacific (+14.1%) regions. The increasing trends are being driven by Omicron subvariants. The trend in reported global weekly mortality decreased for a sixth consecutive week, down 23.5% from the previous week.

Several countries in the Eastern Mediterranean region are reporting major increases in daily incidence over the past couple weeks. Based on the most recent data available, 10 countries are reporting biweekly increases of more than 50%, including 6 that have more than doubled: Morocco (+107%), Palestine (+115%; May 17), Somalia (+136%; May 15), Kuwait (+220%), Pakistan (+337%), and Saudi Arabia (+350%).

UNITED STATES

The US CDC is reporting 82.7 million cumulative cases of COVID-19 and 997,887 deaths. The current average daily incidence of 99,347 has increased 45% over the past 2 weeks—up from 68,502 new cases per day on May 5—and nearly quadrupled from the most recent low of 24,981 on April 4. The daily mortality is fairly steady at an average of 273 deaths per day*, and we have not yet observed an increase corresponding to the surge in daily incidence. Notably, the CDC is reporting that provisional COVID-19 mortality data has surpassed 1 million cumulative deaths, based on data from death certificates; however, the official COVID-19 data has not yet reached that milestone. If the official daily mortality continues at its current pace, we expect the official total to reach 1 million deaths in the next 7-8 days. New COVID-19 hospital admissions continue to trend upwards, with an increase of 22% over the past week. New cases are being driven by the BA.2 subvariant of Omicron (50.9%); however, the proportion of cases due to the BA.2.12.1 sublineage (47.5%) is increasing, and we expect it to exceed 50% of new cases in the near future.

*Changes in state-level reporting may affect the accuracy of recently reported data, particularly over weekends. In an effort to reflect the longer-term trends, the numbers reported here may not correspond to the most recent dates.

VACCINATION

Vaccination progress, in the US and globally, has slowed considerably over the past several months. From week to week, the global and national-level totals are not meaningfully changing, so we are discontinuing this section of our COVID-19 Situation Reports. We will continue to monitor relevant trends and provide future updates as necessary.

US SITUATION Following a 6-week hiatus, the White House COVID-19 Response Team resumed its briefings on May 18, warning that one-third of the US population lives in areas where the reported number of new COVID-19 cases is high enough that they should consider masking in indoor public settings. The US current average daily COVID-19 incidence of 99,347 has increased 45% over the past 2 weeks. But the true number of new cases likely is higher, as the data potentially do not account for many at-home test results. Some experts warn the true numbers might be 5 to 10 times the official counts, leaving many unsure of how to assess their individual risk amid what appears to be the beginning of another surge.

US health officials also urged the US Congress to quickly authorize additional funding to cover the future costs of vaccines, treatments, and diagnostics, as well as fund the development of next generation vaccines. The officials said discussions are underway about extending the eligibility for second vaccine booster doses to all people under age 50. Notably, the US CDC recently updated its guidance to ask those currently eligible for second boosters—anyone age 50 or older, those 12 and older who are immunocompromised, and those who received 2 doses of the J&J-Janssen vaccine—who have had COVID-19 in the past 90 days or who might not be likely to get “very sick” to consider waiting to get the additional shot. The guidance notes that a second booster might be more important in the fall of 2022 or if a new vaccine for a future variant is developed.

NORTH KOREA One week after disclosing the country’s first reported COVID-19 outbreak, North Korea’s state news agency reported 232,880 new cases of fever and 62 deaths, bringing the new total to nearly two million fever cases since late April. The Korean Central News Agency also reported at least 740,000 people remain in quarantine. The country has still not reported any official cases to the WHO, and additional requests for data have not been answered. With limited testing kits to confirm COVID-19 cases, the country has relied on counting “people with fevers” to keep up with cases, raising questions about the nation’s true caseload.

North Korea is employing the military and strict lockdowns in its response, similar to those used in China. But experts fear the efforts may hinder the nation’s ability to handle the outbreak among a largely unvaccinated population, as it lacks adequate supplies and a strong public health network. Rural hospitals are ill-equipped—lacking ventilators, basic equipment, and utilities to support the outbreak—and malnutrition affects at least 40% of the population, weakening their immune defenses. North Korea previously has declined outside assistance, including vaccine offers from COVAX and medical assistance and vaccines from China and South Korea. South Korean media reported that 3 North Korean cargo planes landed in a northeastern Chinese city on Monday to pick up 150 tons of emergency supplies, but neither the South Korean nor Chinese governments confirmed the reports.

SOUTH AFRICA As South Africa weathers its fifth wave of COVID-19—driven by the BA.4 and BA.5 sublineages of the Omicron variant of concern (VOC)—life appears to be moving back to some semblance of pre-pandemic normalcy. But behind the scenes, a network of at least 200 scientists is helping the nation, and the world, determine what might lie around the corner, continuously monitoring infection rates and identifying emerging variants. Dr. Tulio de Oliveira, Director of South Africa’s Center for Epidemic Response and Innovation, holds weekly calls with 9 genomics and diagnostic laboratories to evaluate sequencing data and make predictions. These sessions allowed the team to quickly recognize the Omicron variant when it first emerged in the fall of 2021 and predict the variant would be less severe than previous waves, which helped to inform public health responses worldwide. Recently, the team noticed an uptick in cases caused by the BA.4 and BA.5 sublineages about 2 weeks before new cases began to increase, again helping policymakers prepare. South Africa’s laboratory capabilities—which evolved over the past several decades in response to other diseases, including HIV and tuberculosis—hold lessons for the future on how to continue to track, detect, and predict evolving variants of COVID-19 as well as other pandemic-potential diseases. 

ADDITIONAL BOOSTERS ​​On May 17, the WHO issued an interim statement reviewing evidence regarding the value of additional, or booster, doses of SARS-CoV-2 vaccines. The WHO currently recommends initial booster doses as a tool to reduce hospitalization, severe disease, and death, and to prevent significant impacts on healthcare systems. For additional booster doses, the WHO previously issued a recommendation for an extended primary series (third doses) in addition to a booster dose (fourth dose) for immunocompromised persons. In reviewing studies of additional booster doses following a first booster, the WHO highlighted evidence of some short-term benefit of additional booster doses of mRNA vaccines in more vulnerable populations, including healthcare workers, immunocompromised persons, and those over 60 years of age. Vaccine effectiveness data is currently limited in support of an additional dose for healthy individuals under age 60. Due to continued uncertainty related to the characteristics of future variants and sublineages, the WHO stated that more research is required to understand the durability of various types of immune responses to variants; the vaccine effectiveness of mRNA vaccines and vaccines using other platforms; and the correlates of protection and durability of response in people with and without previous COVID-19 who are vaccinated.

LONG COVID/PASC Researchers from FAIR Health—a non-profit organization that studies the cost of healthcare in the US—published findings from a study on post-acute sequelae of SARS-CoV-2 infection (PASC), commonly referred to as long COVID. In the study, researchers analyzed data from medical records, using the ICD-10 code introduced in October 2021 specifically for long COVID. The researchers included data from more than 78,000 patients who were assigned the diagnostic code in the first 4 months of its use. While the risk of long COVID is higher among those with severe COVID-19 disease (and those at elevated risk for severe disease), there is still substantial risk for those who experience milder COVID-19 symptoms and those at lower risk for severe disease and death. Notably, more than 75% of the long COVID patients in this study were not hospitalized for COVID-19, and the proportion was even higher among female patients (81.6%). Additionally, more than 30% of the patients had no identified comorbidities that would put them at elevated risk for severe acute COVID-19 disease. Similar to previous studies on long COVID, the most commonly reported symptoms included breathing abnormalities (23.2%), cough (18.9%), and malaise and fatigue (16.7%). Among those with breathing abnormalities, shortness of breath (47.2%) and dyspnea (ie, difficulty or labored breathing; 44.4%) were the most common.

Much of the research on long COVID predates the existence of the dedicated ICD-10 code, which poses challenges in terms of identifying relevant patient data. There are ongoing reports of challenges of diagnosing long COVID—in part, due to the non-specific nature of associated symptoms—but the availability of a diagnostic code provides a concrete way of classifying the broad range of conditions. The data included in this study were obtained from private insurance companies, so it did not include patients covered under Medicare or Medicaid, which could affect the findings, particularly for patients aged 65 years and older. This analysis illustrates the risk of prolonged health effects from SARS-CoV-2 infection, even among those who did not experience severe symptoms or who were not at elevated risk for severe disease or death. These findings highlight the importance of ongoing protective measures to slow SARS-CoV-2 transmission, even among those at lower risk for severe COVID-19 disease and death.

A separate study by researchers in the UK evaluated long COVID among vaccinated patients, utilizing data from the UK’s COVID-19 Infection Survey—administered by the Office for National Statistics (ONS). The study included data from more than 28,356 patients (aged 18-69 years) who responded to the survey between February and September 2021 and were vaccinated (at least 1 dose) after they tested positive for SARS-CoV-2 infection. Among the participants, 23.7% self-reported that they experienced symptoms of long COVID at least once during the study period. The first dose of a SARS-CoV-2 vaccine was associated with a 12.8% decrease in the odds of developing long COVID symptoms. The second dose was associated with an additional initial decrease of 8.8%, with a prolonged effect of 0.8% decrease per week after vaccination. This study provides insight into the protective effect of SARS-CoV-2 vaccination on long COVID, at least among individuals who received their first dose after being infected with SARS-CoV-2.

RESEARCH ROUNDUP The research roundup provides quick synopses of COVID-19-related research.

From The Lancet Digital Health, a study using machine learning to find patterns in electronic health record (EHR) data to better understand who might be at greater risk of developing post-acute sequelae of COVID-19, or long COVID. Three machine learning models predicted with high accuracy patients who potentially have long COVID and could be used to identify patients for clinical trials.

From The Lancet Infectious Diseases, correspondence describing a study examining the effect of hybrid immunity in preventing SARS-CoV-2 infection and severe COVID-19 outcomes during the Omicron wave in Brazil, between January 1 and March 22, 2022. The researchers found that during Omicron predominance, previous infection provided robust protection against severe COVID-19 disease, and this was increased with hybrid immunity gained through vaccination with any vaccine type. However, even among individuals with hybrid immunity who had booster doses, protection against symptomatic disease was low and waned over time.

From The Lancet Regional Health Americas, a study examining US CDC surveillance data in regression analysis of daily COVID-19 cases, hospitalization, and mortality matched with regional rates of health insurance. The researchers found groups with lower health insurance coverage had significantly higher mortality, hospitalization, and case counts, as well as lower testing rates early in the pandemic. They estimate that if universal health insurance coverage existed in the US, 60,000 fewer people might have died of COVID-19—26% of the total deaths during the study period.

From JAMA, a test-negative, case-control study conducted during Omicron variant predominance examining vaccine effectiveness (VE) of the Pfizer-BioNTech vaccine among children ages 5-11 years and adolescents ages 12-15 years. Among both age groups, estimated VE for 2 vaccine doses against symptomatic SARS-CoV-2 infection decreased rapidly 2 months following the second dose. However, estimated booster dose effectiveness among adolescents was 71% 2 to 6.5 weeks following the shot, suggesting 3 doses are more effective than 2 in preventing symptomatic infection.

From JAMA, a study from New York state evaluating SARS-CoV-2 infections and hospitalizations among vaccinated children ages 5-11 years (2 doses) and adolescents ages 12-17 years (2 or 3 doses), compared with those who were unvaccinated during the initial Omicron wave. The risks of infection and hospitalization were higher for unvaccinated children and adolescents compared with the vaccinated population, although the risks declined as Omicron became more prevalent. Additionally, protection declined with time since vaccination. The researchers note the findings support efforts to increase vaccination coverage among children and adolescents and support the authorization of booster doses for children ages 5-11 years.

From the Canadian Medical Association Journal (CMAJ), a retrospective cohort study of all adults discharged from hospital after admission for COVID-19 between January 2020 and September 2021 in Alberta and Ontario, Canada. The researchers found 1 in 9 discharged patients died or were readmitted within 30 days after discharge. Of all patients admitted, 91% in Alberta and 95% in Ontario were unvaccinated. Those who were readmitted or died were more likely to be older, male, discharged to a long-term care facility, and have a history of multiple hospitalizations. While the readmission rates for COVID-19 were similar to other respiratory infections requiring hospitalization, the length of stay and in-hospital death rates were higher for COVID-19 patients.

From GeroScience, a study evaluating the prevalence, risk factors, and significance of persistent viral shedding in hospitalized COVID-19 patients. According to the researchers, patients who continued to test positive on RT-PCR more than 14 days after their initial positive test were more likely to experience delirium, longer hospital stays, less likely to be discharged home, and had a greater 6-month mortality than patients who did not show persistent viral shedding. The researchers suggest additional study be conducted to determine whether persistent viral shedding is related to long-term COVID-19-related neurological symptoms.

From BMJ, a multiphase, prospective mixed methods study to develop and test the novel Symptom Burden Questionnaire for Long COVID (SBQ-LC), a patient-reported outcome measure (PROM) specific to long COVID. The questionnaire includes 17 independent scales covering a different symptom domain and was field tested by 274 adults with long COVID. The researchers hope the questionnaire can be used to evaluate the impact of various interventions for long COVID symptoms to inform best practices in clinical management of the condition.

From Family Practice, a retrospective cohort study examining the association between hormone replacement therapy (HRT) or combined oral contraceptive pill (COCP) use and the likelihood of death in women with COVID-19. The researchers found that HRT prescription within 6 months of COVID-19 diagnosis was associated with a reduction in all-cause mortality. No reported events for all-cause mortality among women prescribed COCPs were recorded, preventing further examination of its impact. The researchers suggest further investigation into whether estrogen may provide a protective effect against COVID-19 severity.